Most columns are easy to understand. These are some particular columns:
gwas_class: A class of GWAS used to define pleiotropy in our manuscript.
pp_h4_abf: The probability of the window to share the same causal variant of the expression and GWAS phenotype.
snp_pp_h4: The probability of the SNP being causal given that the Hypothesis H4 is true.
tophits_variant_id: The reference variant for the 100,000 bp window used for the colocalization.
nspns: Then number of SNPs included in the colocalization 100,000 bp window.
What's new
2022-12-14
Version 0.1.3 of the colocalization database with 127 eQTL biosamples, 293 GWAS, 138,274 included
variants and 8,824,741 combinations of variant, eQTL gene and GWAS.